Biblio

K-Nearest Neighbor (k-NN) search is one of the most commonly used approaches for similarity search. It finds extensive applications in machine learning and data mining. This era of big data warrants efficiently scaling k-NN search algorithms for billion-scale datasets with high dimensionality. In this paper, we propose a solution towards this end where we use vantage point trees for partitioning the dataset across multiple processes and exploit an existing graph-based sequential approximate k-NN search algorithm called HNSW (Hierarchical Navigable Small World) for searching locally within a process. Our hybrid MPI-OpenMP solution employs techniques including exploiting MPI one-sided communication for reducing communication times and partition replication for better load balancing across processes. We demonstrate computation of k-NN for 10,000 queries in the order of seconds using our approach on 8000 cores on a dataset with billion points in an 128-dimensional space. We also show 10X speedup over a completely k-d tree-based solution for the same dataset, thus demonstrating better suitability of our solution for high dimensional datasets. Our solution shows almost linear strong scaling.

We propose a novel application of coded computing to the problem of the nearest neighbor estimation using MatDot Codes (Fahim et al., Allerton'17) that are known to be optimal for matrix multiplication in terms of recovery threshold under storage constraints. In approximate nearest neighbor algorithms, it is common to construct efficient in-memory indexes to improve query response time. One such strategy is Multiple Random Projection Trees (MRPT), which reduces the set of candidate points over which Euclidean distance calculations are performed. However, this may result in a high memory footprint and possibly paging penalties for large or high-dimensional data. Here we propose two techniques to parallelize MRPT that exploit data and model parallelism respectively by dividing both the data storage and the computation efforts among different nodes in a distributed computing cluster. This is especially critical when a single compute node cannot hold the complete dataset in memory. We also propose a novel coded computation strategy based on MatDot codes for the model-parallel architecture that, in a straggler-prone environment, achieves the storage-optimal recovery threshold, i.e., the number of nodes that are required to serve a query. We experimentally demonstrate that, in the absence of straggling, our distributed approaches require less query time than execution on a single processing node, providing near-linear speedups with respect to the number of worker nodes. Our experiments on real systems with simulated straggling, we also show that in a straggler-prone environment, our strategy achieves a faster query execution than the uncoded strategy.